In the "Synchronize" pane in TortoiseHG there is an button titled "Options" and clicking upon it will reveal a series of checkboxes for configuration amongst which is "Force push or pull (override safety checks, --force)" and if you uncheck this checkbox the client will object to you attempting to check into a Mercurial repository you have not yet merged with. This safeguard will keep you from creating a branch with two heads.
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